All data is collected and provided for access and conversion into BIDS on rolando.cns.dartmouth.edu.
You need to request access permissions from Andrew Connolly.
All dicoms are organized into
YEAR/MONTH/DATE/ACCESSION hierarchy under
rsync them to your local storage.
At the moment, upon request from a lab member to Yaroslav Halchenko, data is converted from DICOMs into BIDS within the directories hierarchy under
/inbox/BIDS, following convention described in ReproIn section (TODO: make into a reference).
These directories are also DataLad datasets, so you have two options on how to transfer them:
TODO: Yarik figureout
(conda-20200210-datalad) [d31548v@discovery7 tmp]$ datalad install -s 1021_actions --reckless auto 1021_actions_reckless [INFO ] Fetching updates for <Dataset path=/dartfs/rc/lab/D/DBIC/DBIC/tmp/1021_actions_reckless> Dartmouth College, Department of Psychological and Brain Sciences Authorized access only email@example.com's password:
rsync. But you would need to take care about dereferencing symlinks.
rsync --exclude=.git --copy-links -r \ rolando.cns.dartmouth.edu:/inbox/BIDS/dbic/dbic-animals dbic-animals
You could add
--exclude=derivatives to exclude folders with original DICOMS and possible derivatives (fmriqc, etc).