Neuroimaging Data Access
All data is collected and provided for access and conversion into BIDS on rolando.cns.dartmouth.edu.
You need to request access permissions from Andrew Connolly.
DICOMs
All dicoms are organized into YEAR/MONTH/DATE/ACCESSION
hierarchy under /inbox/DICOM
.
You can scp
or rsync
them to your local storage.
BIDS
At the moment, upon request from a lab member to Yaroslav Halchenko, data is converted from DICOMs into BIDS within the directories hierarchy under /inbox/BIDS
, following convention described in ReproIn section (TODO: make into a reference).
These directories are also DataLad datasets, so you have two options on how to transfer them:
Reckless clone still wants to access rolando
TODO: Yarik figureout
(conda-20200210-datalad) [d31548v@discovery7 tmp]$ datalad install -s 1021_actions --reckless auto 1021_actions_reckless
[INFO ] Fetching updates for <Dataset path=/dartfs/rc/lab/D/DBIC/DBIC/tmp/1021_actions_reckless>
Dartmouth College, Department of Psychological and Brain Sciences
Authorized access only
yohtest@rolando.cns.dartmouth.edu's password:
Old fashion way
scp
or rsync
. But you would need to take care about dereferencing symlinks.
rsync --exclude=.git --copy-links -r \
rolando.cns.dartmouth.edu:/inbox/BIDS/dbic/dbic-animals dbic-animals
You could add --exclude=sourcedata
and/or --exclude=derivatives
to exclude folders with original DICOMS and possible derivatives (fmriqc, etc).