- DartBrains - the Psyc60 (Dartmouth fMRI Analysis) course by Prof. Luke Chang (COSANLab), with accent on Python
- DataLad Handbook - all there is to know to use DataLad
- The Princeton Handbook for Reproducible Neuroimaging - another great handbook. Many questions not clarified here, could find answers in that resource. ReproIn is also used as a naming convention at the scanner.
The Center for Open Neuroscience has a collection of resources that maybe useful to you. con/catenate